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Formyl-CoA transferase mutant Asp169 to Ala
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5R PDB ENTRY 1P5R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 4000, Mg chloride, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.82 56.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.116 α = 90 b = 151.116 β = 90 c = 99.593 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2003-09-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.812 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 20.17 98.2 0.091 13.7 4.3 61071 61071 31.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.24 81.9 0.417 2.2 3.3 7477
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1P5R 2.13 20.17 57940 57940 3068 98.24 0.172 0.172 0.171 0.1797 0.2019 0.2112 RANDOM 30.873
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.34 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.115 r_scangle_it 2.467 r_scbond_it 1.496 r_angle_refined_deg 1.404 r_mcangle_it 1.104 r_angle_other_deg 0.817 r_mcbond_it 0.586 r_symmetry_vdw_other 0.229 r_nbd_other 0.228 r_nbd_refined 0.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.115 r_scangle_it 2.467 r_scbond_it 1.496 r_angle_refined_deg 1.404 r_mcangle_it 1.104 r_angle_other_deg 0.817 r_mcbond_it 0.586 r_symmetry_vdw_other 0.229 r_nbd_other 0.228 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.188 r_symmetry_hbond_refined 0.136 r_symmetry_vdw_refined 0.131 r_nbtor_other 0.084 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6620 Nucleic Acid Atoms Solvent Atoms 470 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling