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Crystal structure of the SR CA2+-ATPase with bound AMPPCP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EUL P-domain and M3-M10 transmembrane helices of 1EUL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 6.1 PEG400, pH 6.1, MICRODIALYSIS
Crystal Properties Matthews coefficient Solvent content 3.714 68.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.92 α = 90 b = 123.62 β = 107.21 c = 151.82 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.72 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 20 99 0.056 26.45 6.37 70956 70956 -3 63.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 2.98 94.2 0.24 3.598 3.1 5239
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT P-domain and M3-M10 transmembrane helices of 1EUL 2.9 15 2 70440 69975 3569 98.9 0.256 0.255 0.247 0.287 RANDOM 75.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.93 1.5 28.79 -24.86
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22 c_improper_angle_d 1.49 c_angle_deg 1.3 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22 c_improper_angle_d 1.49 c_angle_deg 1.3 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15342 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 68
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing