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A hypothetical protein PH1897 from Pyrococcus horikoshii with similarities for Inositol-1 monophosphatase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DK4 PDB ENTRY 1DK4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.1 291 PEG 20000, MES, pH 6.1, micro batch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.31 46.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.989 α = 90 b = 89.762 β = 90 c = 120.576 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V mirrors 2003-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1.0 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 99 0.059 5 128854 127566 -3 13.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.32 86.1 0.361 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DK4 1.3 32.78 128640 127483 6396 99.1 0.208 0.208 0.2137 0.217 0.2238 RANDOM 20.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.72 -1.48 -2.25
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.5 c_scangle_it 2.5 c_scbond_it 1.68 c_mcangle_it 1.66 c_angle_deg 1.4 c_mcbond_it 1.05 c_improper_angle_d 0.77 c_bond_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4003 Nucleic Acid Atoms Solvent Atoms 787 Heterogen Atoms 28
Software Software Software Name Purpose CNS refinement BSS data collection SCALEPACK data scaling CNS phasing