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creatininase-product complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 litium sulfate, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.78 67.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.186 α = 90 b = 152.211 β = 90 c = 167.119 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.9780 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40 98 0.037 13.5 333996 333996
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.69 93.7 0.374 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 40 316828 16873 97.84 0.18288 0.18209 0.19776 RANDOM 22.149
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 0.81 -1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.579 r_scangle_it 2.26 r_scbond_it 1.354 r_angle_refined_deg 1.052 r_mcangle_it 0.919 r_angle_other_deg 0.737 r_mcbond_it 0.481 r_symmetry_vdw_other 0.252 r_nbd_other 0.232 r_nbd_refined 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.579 r_scangle_it 2.26 r_scbond_it 1.354 r_angle_refined_deg 1.052 r_mcangle_it 0.919 r_angle_other_deg 0.737 r_mcbond_it 0.481 r_symmetry_vdw_other 0.252 r_nbd_other 0.232 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.108 r_symmetry_hbond_refined 0.107 r_symmetry_vdw_refined 0.1 r_nbtor_other 0.081 r_chiral_restr 0.061 r_metal_ion_refined 0.061 r_bond_refined_d 0.007 r_gen_planes_other 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11928 Nucleic Acid Atoms Solvent Atoms 1835 Heterogen Atoms 156
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling