☰ Navigation Tabs
Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.92 68.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.065 α = 90 b = 86.065 β = 90 c = 75.355 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.9 SPring-8 BL41XU
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.72 30 32927 1721 100 0.16923 0.16819 0.1804 0.19003 0.1917 RANDOM 18.387
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.33 0.65 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.921 r_scangle_it 5.647 r_scbond_it 3.268 r_mcangle_it 1.85 r_angle_refined_deg 1.484 r_mcbond_it 0.966 r_angle_other_deg 0.842 r_symmetry_vdw_other 0.328 r_nbd_other 0.265 r_nbd_refined 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.921 r_scangle_it 5.647 r_scbond_it 3.268 r_mcangle_it 1.85 r_angle_refined_deg 1.484 r_mcbond_it 0.966 r_angle_other_deg 0.842 r_symmetry_vdw_other 0.328 r_nbd_other 0.265 r_nbd_refined 0.243 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.14 r_metal_ion_refined 0.115 r_chiral_restr 0.095 r_nbtor_other 0.077 r_bond_refined_d 0.016 r_gen_planes_other 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_refined r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1432 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling