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Structure of AAC(6')-Ib in complex with Kanamycin C and AcetylCoA.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.75 PROTEIN (10 MG/ML, 20 MM TRIS PH 7.5, 20 MM NACL, 3 MM ACCOA) PRECIPITANT (20% PEG3350, 200 MM CALCIUM ACETATE, 100 MM NACACODYLATE PH 6.75) VAPOR DIFFUSION UNDER OIL
Crystal Properties Matthews coefficient Solvent content 2.63 55.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.399 α = 90 b = 57.399 β = 90 c = 147.113 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU-MSC RAXIS-IV 2006-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 36.79 99.3 0.05 49.4 15.7 13101
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 97.4 0.13 18 14.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.2 147.44 12453 637 98.8 0.179 0.177 0.1794 0.225 0.2234 RANDOM 19.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.485 r_dihedral_angle_4_deg 19.137 r_dihedral_angle_3_deg 11.902 r_dihedral_angle_1_deg 5.83 r_scangle_it 3.225 r_scbond_it 2.075 r_angle_refined_deg 1.499 r_mcangle_it 1.459 r_mcbond_it 0.911 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.485 r_dihedral_angle_4_deg 19.137 r_dihedral_angle_3_deg 11.902 r_dihedral_angle_1_deg 5.83 r_scangle_it 3.225 r_scbond_it 2.075 r_angle_refined_deg 1.499 r_mcangle_it 1.459 r_mcbond_it 0.911 r_nbtor_refined 0.304 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1382 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing