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CRYSTAL STRUCTURE OF THE DENGUE TYPE 3 VIRUS ENVELOPE PROTEIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OAN PDB ENTRY 1OAN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 15% PEG 8K, 0.2 M LICL2, 0.1 M TRIS/HCL, PH 8.5
Crystal Properties Matthews coefficient Solvent content 2.737 55.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.855 α = 90 b = 68.631 β = 90 c = 270.18 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD RH-COATED SI MIRRORS 2003-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 21 91.8 0.12 12.3 5 12090
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.6 3.73 81.1 0.538 2.6 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OAN 3.5 20.99 11159 603 100 0.286 0.284 0.2578 0.324 RANDOM 75.13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 2 -2.87
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.084 r_mcangle_it 4.916 r_scbond_it 3.455 r_dihedral_angle_1_deg 2.885 r_mcbond_it 2.647 r_angle_refined_deg 1.527 r_symmetry_vdw_refined 0.323 r_nbd_refined 0.286 r_symmetry_hbond_refined 0.253 r_xyhbond_nbd_refined 0.165
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.084 r_mcangle_it 4.916 r_scbond_it 3.455 r_dihedral_angle_1_deg 2.885 r_mcbond_it 2.647 r_angle_refined_deg 1.527 r_symmetry_vdw_refined 0.323 r_nbd_refined 0.286 r_symmetry_hbond_refined 0.253 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.098 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6042 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 158
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing SOLVE phasing CNS phasing