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I113T mutant of human SOD1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HL5 PDB ENTRY 1HL5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100 MM NACL, 2.4M AMMONIUM SULPHATE PH 7.5
Crystal Properties Matthews coefficient Solvent content 3.13 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.042 α = 90 b = 203.546 β = 90 c = 144.021 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2002-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.6 0.051 15 10 317774
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 99.7 0.4 3 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HL5 1.6 20 300383 15958 99.6 0.172 0.17 0.1804 0.196 0.2045 RANDOM 21.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 -0.35 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.54 r_dihedral_angle_1_deg 4.791 r_scangle_it 3.779 r_scbond_it 2.266 r_angle_refined_deg 1.58 r_mcangle_it 1.389 r_mcbond_it 0.764 r_symmetry_hbond_refined 0.321 r_nbd_refined 0.275 r_xyhbond_nbd_refined 0.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.54 r_dihedral_angle_1_deg 4.791 r_scangle_it 3.779 r_scbond_it 2.266 r_angle_refined_deg 1.58 r_mcangle_it 1.389 r_mcbond_it 0.764 r_symmetry_hbond_refined 0.321 r_nbd_refined 0.275 r_xyhbond_nbd_refined 0.226 r_symmetry_vdw_refined 0.221 r_metal_ion_refined 0.122 r_chiral_restr 0.107 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11090 Nucleic Acid Atoms Solvent Atoms 2447 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing