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Carbohydrate-Binding Module CBM36 in complex with calcium and xylotriose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other NATIVE STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.50
Crystal Properties Matthews coefficient Solvent content 2 38.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.581 α = 90 b = 52.132 β = 90 c = 54.766 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 99 0.043 27 4.8 18133
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 97 0.094 12 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NATIVE STRUCTURE 1.5 37.8 17217 915 99.2 0.157 0.155 0.1734 0.202 RANDOM 12.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -1.25 1.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.835 r_scangle_it 3.57 r_scbond_it 2.438 r_angle_other_deg 1.882 r_mcangle_it 1.838 r_angle_refined_deg 1.463 r_mcbond_it 1.152 r_symmetry_vdw_other 0.413 r_symmetry_vdw_refined 0.302 r_nbd_other 0.264
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.835 r_scangle_it 3.57 r_scbond_it 2.438 r_angle_other_deg 1.882 r_mcangle_it 1.838 r_angle_refined_deg 1.463 r_mcbond_it 1.152 r_symmetry_vdw_other 0.413 r_symmetry_vdw_refined 0.302 r_nbd_other 0.264 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.153 r_metal_ion_refined 0.106 r_chiral_restr 0.091 r_nbtor_other 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 887 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing