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periplasmic domain of EpsM from Vibrio cholerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 277 6-12MG/ML PROTEIN IN 20MM TRIS PH8, 150MM NACL, 1MM TCEP; RESERVOIR: 2.4-3.0M SODIUM MALONATE, 100MM TRIS PH~8; CRYSTALLISATION: 1.5MKL PROTEIN + 1.5MKL RESERVIOR, 4C, pH 8.00
Crystal Properties Matthews coefficient Solvent content 1.8 32.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.879 α = 90 b = 52.879 β = 90 c = 112.484 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-12-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9791,0.9795,0.9686 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 15.29 99.7 0.047 18 6.61 20676
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 93.4 0.627 2.6 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 20 19604 1027 99.6 0.196 0.2095 0.242 0.247 RANDOM 21.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.21 -0.42 0.63
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.926 r_dihedral_angle_1_deg 5.469 r_scbond_it 4.706 r_mcangle_it 2.7 r_angle_refined_deg 2.302 r_mcbond_it 1.52 r_angle_other_deg 1.068 r_symmetry_vdw_other 0.305 r_nbd_other 0.253 r_nbd_refined 0.234
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.926 r_dihedral_angle_1_deg 5.469 r_scbond_it 4.706 r_mcangle_it 2.7 r_angle_refined_deg 2.302 r_mcbond_it 1.52 r_angle_other_deg 1.068 r_symmetry_vdw_other 0.305 r_nbd_other 0.253 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.214 r_symmetry_hbond_refined 0.178 r_symmetry_vdw_refined 0.159 r_chiral_restr 0.158 r_nbtor_other 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1228 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing