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Exo-mannosidase from Cellvibrio mixtus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 24% PEG 4000, 0.1M NA ACETATE PH 4.6, 0.2M AMMONIUM SULFATE
Crystal Properties Matthews coefficient Solvent content 2.3 46.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.221 α = 90 b = 101.759 β = 90 c = 50.248 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2002-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 40 97.8 0.06 20.8 6 73917
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 81.7 0.267 3.57 3.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.5 19.88 70083 3726 97.8 0.123 0.121 0.1459 0.152 0.1694 RANDOM 12.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.934 r_scangle_it 2.962 r_scbond_it 2.011 r_angle_other_deg 1.668 r_mcangle_it 1.406 r_angle_refined_deg 1.328 r_mcbond_it 0.86 r_symmetry_vdw_refined 0.311 r_symmetry_vdw_other 0.27 r_nbd_other 0.248
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.934 r_scangle_it 2.962 r_scbond_it 2.011 r_angle_other_deg 1.668 r_mcangle_it 1.406 r_angle_refined_deg 1.328 r_mcbond_it 0.86 r_symmetry_vdw_refined 0.311 r_symmetry_vdw_other 0.27 r_nbd_other 0.248 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.198 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.105 r_nbtor_other 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3312 Nucleic Acid Atoms Solvent Atoms 654 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing