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Regulation of Cytolysin Expression by Enterococcus faecalis: Role of CylR2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 SALTING-IN BY DIALYSIS AGAINST 0.2 M NAI, 10 % GLYCEROL, 50 MM HEPES PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.7 54.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.679 α = 90 b = 63.679 β = 90 c = 41.187 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate COSMIC MIRRORS CMF12-38CU6 2003-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS M18X
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 99.2 0.104 19 14.8 13086 25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.9 0.44 5.8 13.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.9 19.76 13208 651 100 0.155 0.153 0.1645 0.193 RANDOM 25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.19 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.857 r_scangle_it 3.284 r_scbond_it 2.028 r_mcangle_it 1.327 r_angle_refined_deg 1.219 r_angle_other_deg 0.812 r_mcbond_it 0.725 r_symmetry_vdw_other 0.384 r_symmetry_hbond_refined 0.333 r_nbd_other 0.246
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.857 r_scangle_it 3.284 r_scbond_it 2.028 r_mcangle_it 1.327 r_angle_refined_deg 1.219 r_angle_other_deg 0.812 r_mcbond_it 0.725 r_symmetry_vdw_other 0.384 r_symmetry_hbond_refined 0.333 r_nbd_other 0.246 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.222 r_symmetry_vdw_refined 0.124 r_nbtor_other 0.121 r_metal_ion_refined 0.087 r_chiral_restr 0.079 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1071 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 10
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing SHELXE phasing REFMAC refinement