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Mona/Gads SH3C in complex with HPK derived peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OEB PDB ENTRY 1OEB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2M AMMONIUM SULFATE, 0.05M HEPES PH7.5, pH 7.50
Crystal Properties Matthews coefficient Solvent content 1.8 32.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.456 α = 90 b = 27.442 β = 104.22 c = 33.043 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2003-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20 97.4 0.03 25.2 3.4 9855
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 98.2 0.065 14.7 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OEB 1.5 34.71 9573 485 99.3 0.208 0.207 0.2155 0.221 0.2314 RANDOM 14.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.31 -0.21 0.25 0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.625 r_scangle_it 2.604 r_scbond_it 1.59 r_mcangle_it 1.312 r_angle_refined_deg 1.113 r_angle_other_deg 0.785 r_mcbond_it 0.699 r_nbd_other 0.233 r_symmetry_vdw_other 0.222 r_nbd_refined 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.625 r_scangle_it 2.604 r_scbond_it 1.59 r_mcangle_it 1.312 r_angle_refined_deg 1.113 r_angle_other_deg 0.785 r_mcbond_it 0.699 r_nbd_other 0.233 r_symmetry_vdw_other 0.222 r_nbd_refined 0.19 r_symmetry_hbond_refined 0.138 r_xyhbond_nbd_refined 0.135 r_nbtor_other 0.081 r_chiral_restr 0.074 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_symmetry_vdw_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 590 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing