☰ Navigation Tabs
DntR from Burkholderia sp. strain DNT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.50
Crystal Properties Matthews coefficient Solvent content 3.5 64.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.148 α = 90 b = 107.148 β = 90 c = 296.654 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 98.2 0.091 11.4 4.7 29866
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.65 97.7 0.524 2.8 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.59 91.29 29866 1630 97.2 0.217 0.215 0.22 0.261 0.2629 RANDOM 45.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.12 0.56 1.12 -1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.463 r_scangle_it 2.66 r_scbond_it 1.521 r_angle_refined_deg 1.428 r_mcangle_it 1.263 r_angle_other_deg 0.852 r_mcbond_it 0.658 r_symmetry_vdw_other 0.25 r_nbd_other 0.235 r_xyhbond_nbd_refined 0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.463 r_scangle_it 2.66 r_scbond_it 1.521 r_angle_refined_deg 1.428 r_mcangle_it 1.263 r_angle_other_deg 0.852 r_mcbond_it 0.658 r_symmetry_vdw_other 0.25 r_nbd_other 0.235 r_xyhbond_nbd_refined 0.193 r_nbd_refined 0.192 r_symmetry_hbond_refined 0.184 r_symmetry_vdw_refined 0.154 r_nbtor_other 0.092 r_chiral_restr 0.082 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3447 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing