☰ Navigation Tabs
L-leucine-binding protein with phenylalanine bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1USG PDB ENTRY 1USG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.236 α = 90 b = 78.143 β = 102.82 c = 70.183 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2003-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 35 96.2 0.095 10.6 3.1 60887
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 74 0.45 1.5 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1USG 1.8 35 60887 3242 96.2 0.191 0.189 0.194 0.222 0.2233 RANDOM 22.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 -0.17 0.36 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.982 r_scangle_it 5.238 r_scbond_it 3.329 r_mcangle_it 1.884 r_angle_refined_deg 1.87 r_mcbond_it 1.114 r_angle_other_deg 0.928 r_symmetry_vdw_refined 0.257 r_nbd_other 0.251 r_symmetry_hbond_refined 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.982 r_scangle_it 5.238 r_scbond_it 3.329 r_mcangle_it 1.884 r_angle_refined_deg 1.87 r_mcbond_it 1.114 r_angle_other_deg 0.928 r_symmetry_vdw_refined 0.257 r_nbd_other 0.251 r_symmetry_hbond_refined 0.218 r_nbd_refined 0.217 r_symmetry_vdw_other 0.212 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.122 r_nbtor_other 0.092 r_bond_refined_d 0.025 r_gen_planes_other 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5192 Nucleic Acid Atoms Solvent Atoms 299 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing