☰ Navigation Tabs
Structure of the 6-phospho-beta glucosidase from Thermotoga maritima at 2.85 Angstrom resolution in the monoclinic form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 200 MM CALCIUM ACETATE, 100MM SODIUM ACETATE PH 4.6, 5% PEG 4000. PROTEIN AT 5 MG/ML
Crystal Properties Matthews coefficient Solvent content 2.8 56.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.048 α = 90 b = 188.315 β = 104.52 c = 125.628 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 2002-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 40 99.9 0.11 12.3 4.3 103065 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 2.95 99.4 0.382 3.4 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.85 40 97911 5153 99.6 0.198 0.196 0.2364 0.235 0.2579 RANDOM 21.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 2.05 1.74 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.541 r_scangle_it 3.42 r_scbond_it 2.147 r_angle_refined_deg 1.371 r_mcangle_it 0.959 r_mcbond_it 0.411 r_symmetry_vdw_refined 0.265 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.541 r_scangle_it 3.42 r_scbond_it 2.147 r_angle_refined_deg 1.371 r_mcangle_it 0.959 r_mcbond_it 0.411 r_symmetry_vdw_refined 0.265 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.131 r_chiral_restr 0.099 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26200 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing SOLVE phasing REFMAC refinement