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High resolution crystal structure of the Pleckstrin Homology Domain Of Protein Kinase B/Akt Bound To Ins(1,3,4,5)-Tetrakisphophate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H10 PDB ENTRY 1H10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 0.25 M AMMONIUM ACETATE, 30 % PEG 4000, 0.1 M SODIUM ACETATE (4.6), pH 4.60
Crystal Properties Matthews coefficient Solvent content 1.54 30
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.904 α = 90 b = 34.388 β = 115.29 c = 44.292 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.98 15 93.2 0.064 19.3 3.4 60005
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.98 1.02 92.9 0.557 2.8 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H10 0.98 15 60005 2429 89.1 0.1513 0.154 0.1604 0.179 0.1838 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 10 961 1167.5
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.078 s_approx_iso_adps 0.077 s_anti_bump_dis_restr 0.068 s_zero_chiral_vol 0.066 s_similar_adp_cmpnt 0.05 s_angle_d 0.03 s_from_restr_planes 0.0278 s_bond_d 0.014 s_rigid_bond_adp_cmpnt 0.005 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 985 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 28
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling CNS phasing