☰ Navigation Tabs
Complex of beta-clamp processivity factor and little finger domain of PolIV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2POL PDB ENTRY 2POL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 287 CRYSTALS WERE OBTAINED USING HANGING DROP METHOD AT 14C. WELL CONSISTED OF 1.2M AMMONIUM SULPHATE, 50MM SODIUM ACETATE PH 4.6. 2UL DROP CONSISTED OF 1UL WELL SOLUTION PLUS 1UL PROTEIN SOLUTION (50MM HEPES PH7.0, 2MM MAGNESIUM CHLORIDE, 200MM SODIUM CHLORIDE AND PROTEIN AT 6MG/ML).
Crystal Properties Matthews coefficient Solvent content 2.4 48.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.451 α = 90 b = 70.117 β = 90 c = 110.916 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 100 96.5 0.06 8.3 4.9 90134
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.01 87.4 0.201 3.5 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2POL 1.9 62.1 83223 4388 96.7 0.179 0.24 0.2508 RANDOM 21.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.4 -1.07
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.487 r_dihedral_angle_1_deg 7.012 r_scbond_it 4.664 r_mcangle_it 2.792 r_angle_refined_deg 2.712 r_mcbond_it 1.631 r_symmetry_vdw_refined 0.378 r_chiral_restr 0.301 r_nbd_refined 0.254 r_symmetry_hbond_refined 0.236
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.487 r_dihedral_angle_1_deg 7.012 r_scbond_it 4.664 r_mcangle_it 2.792 r_angle_refined_deg 2.712 r_mcbond_it 1.631 r_symmetry_vdw_refined 0.378 r_chiral_restr 0.301 r_nbd_refined 0.254 r_symmetry_hbond_refined 0.236 r_xyhbond_nbd_refined 0.206 r_bond_refined_d 0.032 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7528 Nucleic Acid Atoms Solvent Atoms 947 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing