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CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT T80A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1B1I PDB ENTRY 1B1I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 15% PEG 4000, 0.02% DIOXANE, 0.2M SODIUM POTASSIUM TARTRATE, 0.02M SODIUM CITRATE BUFFER, PH 5.2
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.549 α = 90 b = 38.297 β = 90 c = 39.043 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC CCD RH/SI MIRROR 2001-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 98.6 0.056 13.6 4.6 7942
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 97.3 0.233 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1B1I 2.1 43.44 7551 367 98.6 0.193 0.191 0.232 RANDOM 28.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.96 -0.83 1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.959 r_scangle_it 2.665 r_scbond_it 1.652 r_mcangle_it 1.411 r_angle_other_deg 1.258 r_mcbond_it 0.763 r_nbd_refined 0.179 r_xyhbond_nbd_refined 0.177 r_symmetry_vdw_refined 0.129 r_symmetry_hbond_refined 0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.959 r_scangle_it 2.665 r_scbond_it 1.652 r_mcangle_it 1.411 r_angle_other_deg 1.258 r_mcbond_it 0.763 r_nbd_refined 0.179 r_xyhbond_nbd_refined 0.177 r_symmetry_vdw_refined 0.129 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_refined_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 913 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing