☰ Navigation Tabs
Structural basis of sugar-recognizing ubiquitin ligase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 Tris, PEG400, Nickel Chloride, Ammonium Sulfate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 3.14 60.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.44 α = 90 b = 62.44 β = 90 c = 117.3 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE RIGAKU RAXIS IV mirrors 2002-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 100 99.9 18483 18483
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 99.9 0.278 10.1 2647
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2 54.23 17470 945 99.64 0.15523 0.15523 0.15327 0.19229 RANDOM 29.192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.18 -0.36 0.54
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.651 r_dihedral_angle_1_deg 5.955 r_scbond_it 4.061 r_mcangle_it 2.585 r_angle_refined_deg 1.785 r_mcbond_it 1.354 r_angle_other_deg 0.964 r_symmetry_hbond_refined 0.334 r_symmetry_vdw_other 0.297 r_nbd_other 0.274
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.651 r_dihedral_angle_1_deg 5.955 r_scbond_it 4.061 r_mcangle_it 2.585 r_angle_refined_deg 1.785 r_mcbond_it 1.354 r_angle_other_deg 0.964 r_symmetry_hbond_refined 0.334 r_symmetry_vdw_other 0.297 r_nbd_other 0.274 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.178 r_metal_ion_refined 0.158 r_chiral_restr 0.127 r_symmetry_vdw_refined 0.09 r_nbtor_other 0.089 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1489 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MLPHARE phasing