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Solution structure of the second PDZ domain of human membrane associated guanylate kinase inverted-2 (MAGI-2)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 1.3mM PDZ domain U-15N, 13C; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 100mM 7.0 ambient 298 2 3D_15N-separated_NOESY 1.3mM PDZ domain U-15N, 13C; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 100mM 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics, restrained molecular dynamics XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations, structures with the lowest energy, target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 2.6 Bruker 2 processing NMRPipe 20020425 Delaglio, F. 3 data analysis NMRView 5.0.4 Johnson, B.A. 4 data analysis KUJIRA 0.811 Kobayashi, N. 5 structure solution CYANA 1.0.7 Guentert, P. 6 refinement OPALp Koradi, R., Billeter, M., Guentert, P.