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Structure of putative acetyltransferase, YYCN protein of Bacillus subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 900mM Ammonium phosphate, 190mM Sodium chloride, 100mM Imidazole, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.9 57.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.26 α = 90 b = 88.58 β = 98.8 c = 55.8 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-04-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 0.9792, 0.9565 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 26.08 99.3 0.113 0.085 6.8 3.8 21340 21316 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.3 0.318 0.238 18.8 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 26.08 -3 20220 20220 1096 99.89 0.258 0.2339 0.23252 0.2312 0.25894 0.2584 RANDOM 29.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.1 0.02 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.771 r_scangle_it 3.257 r_dihedral_angle_1_deg 3.203 r_scbond_it 1.998 r_mcangle_it 1.297 r_angle_refined_deg 1.255 r_mcbond_it 0.672 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.248 r_xyhbond_nbd_refined 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.771 r_scangle_it 3.257 r_dihedral_angle_1_deg 3.203 r_scbond_it 1.998 r_mcangle_it 1.297 r_angle_refined_deg 1.255 r_mcbond_it 0.672 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.248 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.142 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2543 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling SHARP phasing SOLVE phasing