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MURINE/HUMAN UBIQUITIN-CONJUGATING ENZYME UBC9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AAK PDB ENTRY 1AAK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 23% PEG MONOMETHYL ETHER 5000,9% ISOPROPANOL, 0.1 M AMMONIUM SULFATE, 0.1 M MES BUFFER, PH6.5
Crystal Properties Matthews coefficient Solvent content 2.64 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.39 α = 90 b = 93.95 β = 90 c = 115.89 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 281 IMAGE PLATE MARRESEARCH 1996-05-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 98 0.058 0.058 17 3.2 12854 1 29.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.02 2.05 99 0.41 0.41 3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1AAK 2 10 12854 12854 629 98 0.185 0.1788 0.25 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 16.7 t_it 2.64 t_angle_deg 1.44 t_bond_d 0.015 t_gen_planes 0.012 t_nbd 0.011 t_trig_c_planes 0.006 t_incorr_chiral_ct t_pseud_angle
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1276 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms
Software Software Software Name Purpose AMoRE phasing TNT refinement DENZO data reduction SCALEPACK data scaling