1U6P
NMR Structure of the MLV encapsidation signal bound to the Nucleocapsid protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.2MM PSI MONOMERIC RNA GUA-15N,13C;10MM TRIS, 100% D2O | 10MM TRIS, 100% D2O | 10 mM Nacl | 7.0 | AMBIENT | 308 | |
2 | 2D TOCSY | 1.2MM PSI MONOMERIC RNA GUA-15N,13C;10MM TRIS, 100% D2O | 10MM TRIS, 100% D2O | 10 mM Nacl | 7.0 | AMBIENT | 308 | |
3 | 3D_13C-separated_NOESY | 1.2MM PSI MONOMERIC RNA GUA-15N,13C;10MM TRIS, 100% D2O | 10MM TRIS, 100% D2O | 10 mM Nacl | 7.0 | AMBIENT | 308 | |
4 | 3D_15N-separated_NOESY | 1.2MM PSI MONOMERIC RNA GUA-15N,13C;10MM TRIS, 100% D2O | 10MM TRIS, 100% D2O | 10 mM Nacl | 7.0 | AMBIENT | 308 | |
5 | 4D_13C/15N-separated_NOESY | 1.2MM PSI MONOMERIC RNA GUA-15N,13C;10MM TRIS, 100% D2O | 10MM TRIS, 100% D2O | 10 mM Nacl | 7.0 | AMBIENT | 308 | |
6 | 4D_13C-separated_NOESY | 1.2MM PSI MONOMERIC RNA GUA-15N,13C;10MM TRIS, 100% D2O | 10MM TRIS, 100% D2O | 10 mM Nacl | 7.0 | AMBIENT | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
TORSION ANGLE DYNAMICS, SIMULATED ANNEALING | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | bruker |
2 | processing | NMRPipe | 2.1 | Delaglio F et.al |
3 | data analysis | NMRView | 5.0.3 | Johnson B |
4 | refinement | CYANA | Guntert |