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Crystal structure of protein PA1353 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 30% PEG 6000, 1M Lithium Chloride, 0.1M sodium Acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.78 55.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.579 α = 90 b = 76.294 β = 90 c = 82.193 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 70 CCD MARRESEARCH 2004-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97900 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 0.111 9121 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.81 20 9085 434 99.78 0.1999 0.19709 0.1946 0.25712 0.2563 RANDOM 37.815
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.8 -0.98 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.171 r_dihedral_angle_4_deg 22.335 r_dihedral_angle_3_deg 20.733 r_sphericity_free 8.692 r_scangle_it 8.599 r_dihedral_angle_1_deg 7.868 r_mcangle_it 7.178 r_scbond_it 5.923 r_sphericity_bonded 5.148 r_mcbond_it 5.043
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.171 r_dihedral_angle_4_deg 22.335 r_dihedral_angle_3_deg 20.733 r_sphericity_free 8.692 r_scangle_it 8.599 r_dihedral_angle_1_deg 7.868 r_mcangle_it 7.178 r_scbond_it 5.923 r_sphericity_bonded 5.148 r_mcbond_it 5.043 r_rigid_bond_restr 4.789 r_angle_refined_deg 2.533 r_symmetry_vdw_refined 0.411 r_symmetry_hbond_refined 0.374 r_nbtor_refined 0.35 r_nbd_refined 0.289 r_xyhbond_nbd_refined 0.269 r_chiral_restr 0.155 r_bond_refined_d 0.031 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1985 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling SOLVE phasing