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MCSG APC5046 Probable glutaminase ybaS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 crystallization solution: 0.1M Hepes, 10% isopropanol, 20% PEG 4000. Cryoprotectant: crystallization solution plus 12% Ethylene glycol, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.45 49.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.509 α = 90 b = 155.891 β = 90 c = 164.171 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97978 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 50 77.9 131904
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.67 23
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.61 40 125216 6641 78.72 0.14468 0.14468 0.14295 0.1574 0.17761 0.1893 RANDOM 13.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -1.68 2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.01 r_scangle_it 4.556 r_scbond_it 2.902 r_angle_refined_deg 1.599 r_mcangle_it 1.507 r_angle_other_deg 0.925 r_mcbond_it 0.877 r_symmetry_vdw_other 0.314 r_symmetry_vdw_refined 0.25 r_nbd_other 0.248
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.01 r_scangle_it 4.556 r_scbond_it 2.902 r_angle_refined_deg 1.599 r_mcangle_it 1.507 r_angle_other_deg 0.925 r_mcbond_it 0.877 r_symmetry_vdw_other 0.314 r_symmetry_vdw_refined 0.25 r_nbd_other 0.248 r_symmetry_hbond_refined 0.248 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.21 r_chiral_restr 0.112 r_nbtor_other 0.086 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9216 Nucleic Acid Atoms Solvent Atoms 1150 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing