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Crystal Structures of the Phosphorylated and Unphosphorylated Kinase Domains of the CDC42-associated Tyrosine Kinase ACK1 bound to AMP-PCP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U46
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 291 PEG 4000, lithium sulfate, magnesium chloride, sodium chloride, AMP-PCP, Tris, TCEP, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.3 45.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 200.384 α = 90 b = 42.332 β = 96.28 c = 70.848 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 38.71 98.3 0.058 12.9 3.6 14697
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 97.8 0.319 3.7 3.64
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U46 2.8 38.71 14697 684 98.3 0.226 0.222 0.2255 0.322 0.3136 RANDOM 27.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 1.56 2.98 -2.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.343 r_scangle_it 2.29 r_angle_refined_deg 1.972 r_scbond_it 1.51 r_angle_other_deg 0.912 r_mcangle_it 0.896 r_mcbond_it 0.515 r_symmetry_vdw_other 0.26 r_nbd_refined 0.252 r_nbd_other 0.231
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.343 r_scangle_it 2.29 r_angle_refined_deg 1.972 r_scbond_it 1.51 r_angle_other_deg 0.912 r_mcangle_it 0.896 r_mcbond_it 0.515 r_symmetry_vdw_other 0.26 r_nbd_refined 0.252 r_nbd_other 0.231 r_symmetry_vdw_refined 0.23 r_xyhbond_nbd_refined 0.188 r_symmetry_hbond_refined 0.128 r_chiral_restr 0.094 r_nbtor_other 0.093 r_metal_ion_refined 0.083 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4217 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling MOLREP phasing