☰ Navigation Tabs
The structure of a Predicted Epimerase PA4716 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 di-Ammonium Citrate, PEG 3350, sucrose, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.1 40.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.778 α = 90 b = 69.477 β = 101.1 c = 94.95 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD CUSTOM-MADE SBC2 2004-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97959 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 98.18 75759 75759
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.57 97.3 0.371 5.74 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 91.29 77163 75759 4008 98.18 0.16827 0.16827 0.16718 0.1688 0.18867 0.1891 RANDOM 15.202
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.17 -0.65 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.464 r_scangle_it 3.383 r_scbond_it 2.022 r_mcangle_it 1.375 r_angle_refined_deg 1.193 r_angle_other_deg 0.761 r_mcbond_it 0.717 r_symmetry_vdw_other 0.305 r_nbd_other 0.246 r_nbd_refined 0.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.464 r_scangle_it 3.383 r_scbond_it 2.022 r_mcangle_it 1.375 r_angle_refined_deg 1.193 r_angle_other_deg 0.761 r_mcbond_it 0.717 r_symmetry_vdw_other 0.305 r_nbd_other 0.246 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.161 r_symmetry_hbond_refined 0.133 r_symmetry_vdw_refined 0.123 r_chiral_restr 0.078 r_nbtor_other 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4349 Nucleic Acid Atoms Solvent Atoms 913 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing autoSHARP phasing CNS refinement