1U0G

Crystal structure of mouse phosphoglucose isomerase in complex with erythrose 4-phosphate


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherNATIVE STRUCTURE

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52941.9 M ammonium sulphate, 100 mM Tris-HCl, pH 8.5 , VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.341.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.8α = 90
b = 115.6β = 100.2
c = 73.2γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVmirrors2002-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75497.50.0670.0677.44.212363712363719.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7681.80.2710.2711.9312331

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONREFINEMENTTHROUGHOUTNATIVE STRUCTURE1.750118864118664594397.50.1920.1920.190.215RANDOM19.099
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.35-0.370.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.421
r_scangle_it2.177
r_scbond_it1.325
r_angle_refined_deg1.052
r_mcangle_it0.757
r_mcbond_it0.396
r_nbd_refined0.19
r_symmetry_vdw_refined0.163
r_xyhbond_nbd_refined0.119
r_symmetry_hbond_refined0.105
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.421
r_scangle_it2.177
r_scbond_it1.325
r_angle_refined_deg1.052
r_mcangle_it0.757
r_mcbond_it0.396
r_nbd_refined0.19
r_symmetry_vdw_refined0.163
r_xyhbond_nbd_refined0.119
r_symmetry_hbond_refined0.105
r_chiral_restr0.08
r_bond_refined_d0.008
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8814
Nucleic Acid Atoms
Solvent Atoms832
Heterogen Atoms115

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
d*TREKdata scaling