1U0F

Crystal structure of mouse phosphoglucose isomerase in complex with glucose 6-phosphate


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherNATIVE STRUCTURE

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52941.9 M ammonium sulphate, 100 mM Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.341.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.4α = 90
b = 116.8β = 101.6
c = 73.9γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2002-08-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.64594.70.0570.05734.1614357814357819.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6679.90.3690.3693.12.812096

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONREFINEMENT FROM THE NATIVE STRUCTURETHROUGHOUTNATIVE STRUCTURE1.645143578143578721094.60.180.180.1780.207RANDOM23.854
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.011.09-1.551.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.578
r_scangle_it2.917
r_scbond_it1.779
r_angle_refined_deg1.213
r_mcangle_it1.095
r_mcbond_it0.595
r_nbd_refined0.197
r_symmetry_vdw_refined0.17
r_xyhbond_nbd_refined0.137
r_symmetry_hbond_refined0.114
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.578
r_scangle_it2.917
r_scbond_it1.779
r_angle_refined_deg1.213
r_mcangle_it1.095
r_mcbond_it0.595
r_nbd_refined0.197
r_symmetry_vdw_refined0.17
r_xyhbond_nbd_refined0.137
r_symmetry_hbond_refined0.114
r_chiral_restr0.1
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8814
Nucleic Acid Atoms
Solvent Atoms858
Heterogen Atoms148

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
SCALEPACKdata scaling