X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.529325% (v/v) PEG Monomethyl Ether 550, 0.01 M Zinc Sulfate heptahydrate, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 6.50
Crystal Properties
Matthews coefficientSolvent content
2.7254.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.769α = 90
b = 88.758β = 90
c = 154.795γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMIRRORS2000-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7BEMBL/DESY, HAMBURGBW7B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6434.4692.50.0571185681
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.641.6584

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2YAH1.6434.46118568118568831092.50.1640.1610.197RANDOM15.88
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.36-0.080.44
RMS Deviations
KeyRefinement Restraint Deviation
p_singtor_nbd5.115
p_scangle_it1.901
p_mcangle_it1.685
p_angle_d1.659
p_scbond_it1.252
p_mcbond_it1.088
p_chiral_restr0.153
p_bond_d0.012
p_plane_restr0.006
p_angle_deg
RMS Deviations
KeyRefinement Restraint Deviation
p_singtor_nbd5.115
p_scangle_it1.901
p_mcangle_it1.685
p_angle_d1.659
p_scbond_it1.252
p_mcbond_it1.088
p_chiral_restr0.153
p_bond_d0.012
p_plane_restr0.006
p_angle_deg
p_planar_d
p_hb_or_metal_coord
p_multtor_nbd
p_xhyhbond_nbd
p_xyhbond_nbd
p_planar_tor
p_staggered_tor
p_orthonormal_tor
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6788
Nucleic Acid Atoms
Solvent Atoms1596
Heterogen Atoms187

Software

Software
Software NamePurpose
DENZOdata reduction
TRUNCATEdata reduction
AMoREphasing
REFMACrefinement
CCP4data scaling