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T. maritima NusB, P212121
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EYV PDB ID 1EYV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 2-propanol, PEG 4000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.8 31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.766 α = 90 b = 59.6 β = 90 c = 64.322 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 30 94.6 0.068 20.6 2.5 11016 27.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 94.8 0.253 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ID 1EYV 1.85 20 10471 526 94.87 0.22575 0.2244 0.2327 0.25253 0.2562 RANDOM 24.943
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 -4.28 3.29
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.827 r_dihedral_angle_1_deg 4.626 r_scbond_it 3.4 r_mcangle_it 2.421 r_mcbond_it 1.265 r_angle_refined_deg 1.015 r_angle_other_deg 0.791 r_nbd_refined 0.307 r_symmetry_vdw_other 0.272 r_nbd_other 0.217
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.827 r_dihedral_angle_1_deg 4.626 r_scbond_it 3.4 r_mcangle_it 2.421 r_mcbond_it 1.265 r_angle_refined_deg 1.015 r_angle_other_deg 0.791 r_nbd_refined 0.307 r_symmetry_vdw_other 0.272 r_nbd_other 0.217 r_symmetry_hbond_refined 0.132 r_xyhbond_nbd_refined 0.121 r_nbtor_other 0.084 r_symmetry_vdw_refined 0.078 r_chiral_restr 0.057 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1175 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing