☰ Navigation Tabs
MEPA, inactive form without ZN in P21
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other A partial model of MEPA in a different crystal form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 ammonium sulfate, MES, PEG monomethyl ether 5000, 1,4-butanediol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 45.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.949 α = 90 b = 115.143 β = 94.08 c = 49.154 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 20 91.3 0.036 0.036 10 3.5 91010 14.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.48 94.3 0.129 0.129 5.5 3.4 13722
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT A partial model of MEPA in a different crystal form 1.4 19.73 86482 86482 4528 91.11 0.18447 0.18447 0.18334 0.1927 0.2061 0.2114 RANDOM 13.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.17 0.33 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.771 r_scangle_it 3.311 r_scbond_it 2.104 r_angle_refined_deg 1.514 r_mcangle_it 1.48 r_angle_other_deg 0.841 r_mcbond_it 0.822 r_nbd_other 0.248 r_symmetry_vdw_other 0.247 r_nbd_refined 0.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.771 r_scangle_it 3.311 r_scbond_it 2.104 r_angle_refined_deg 1.514 r_mcangle_it 1.48 r_angle_other_deg 0.841 r_mcbond_it 0.822 r_nbd_other 0.248 r_symmetry_vdw_other 0.247 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.14 r_xyhbond_nbd_refined 0.128 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.089 r_nbtor_other 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3728 Nucleic Acid Atoms Solvent Atoms 560 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing