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Crystal Structure of Putative Antibiotic Biosythesis Monooxygenase from Bacillus cereus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 Sodium Formate, Sodium Acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.1 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.894 α = 90 b = 86.08 β = 90.1 c = 42.867 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 mirrors 2004-03-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793, 0.9794, 0.954 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 40 99.4 0.083 9.3 6.9 40217 38958
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.91 95 0.479 2.3 5 3690
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.84 37.27 34428 34428 3841 98.23 0.2096 0.20962 0.20398 0.214 0.26073 0.2684 RANDOM 25.499
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.91 -0.43 1.42 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.444 r_scangle_it 3.697 r_scbond_it 2.259 r_mcangle_it 1.723 r_angle_refined_deg 1.333 r_mcbond_it 0.949 r_angle_other_deg 0.773 r_symmetry_vdw_other 0.311 r_nbd_other 0.253 r_nbd_refined 0.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.444 r_scangle_it 3.697 r_scbond_it 2.259 r_mcangle_it 1.723 r_angle_refined_deg 1.333 r_mcbond_it 0.949 r_angle_other_deg 0.773 r_symmetry_vdw_other 0.311 r_nbd_other 0.253 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.19 r_symmetry_vdw_refined 0.174 r_symmetry_hbond_refined 0.163 r_chiral_restr 0.087 r_nbtor_other 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2498 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection CrystalClear data reduction HKL-2000 data scaling SOLVE phasing