☰ Navigation Tabs
X-RAY CRYSTAL STRUCTURE OF PHZG FROM PSEUDOMONAS FLUORESCENS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T9M PDB entry 1T9M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 21% PEG 4000, 0.2M ammonium sulfate, 0.1M sodium citrate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.44 49.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.28 α = 90 b = 63.3 β = 90 c = 132.76 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IV++ MSC Blue Confocal optics 2004-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.8 98.7 0.065 9.6 3.7 46175 45573
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 90.1 0.347 3.3 3.4 4549
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1T9M 1.8 20 42941 2296 99.38 0.19533 0.19268 0.1956 0.2461 0.2483 RANDOM 28.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 0.39 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.083 r_dihedral_angle_4_deg 16.75 r_dihedral_angle_3_deg 14.85 r_dihedral_angle_1_deg 7.176 r_scangle_it 4.628 r_scbond_it 3.061 r_mcangle_it 1.941 r_angle_refined_deg 1.819 r_mcbond_it 1.292 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.083 r_dihedral_angle_4_deg 16.75 r_dihedral_angle_3_deg 14.85 r_dihedral_angle_1_deg 7.176 r_scangle_it 4.628 r_scbond_it 3.061 r_mcangle_it 1.941 r_angle_refined_deg 1.819 r_mcbond_it 1.292 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.181 r_symmetry_hbond_refined 0.16 r_chiral_restr 0.137 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3333 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction d*TREK data scaling AMoRE phasing