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Crystal Structure of the DH/PH domains of Leukemia-associated RhoGEF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 PEG3350, sodium chloride, sodium citrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.5 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 193.606 α = 90 b = 45.859 β = 107.49 c = 74.73 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 4 mirror 2002-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 1.0 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 50 98.3 0.046 21 4 36990 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.21 93.7 0.365 3.3 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.13 24.85 -1 -1 35784 1883 97.48 0.23676 0.2348 0.2324 0.27433 RANDOM 36.256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.62 -0.08 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.341 r_scangle_it 3.311 r_scbond_it 2.142 r_mcangle_it 2.114 r_angle_refined_deg 1.486 r_mcbond_it 1.302 r_angle_other_deg 0.824 r_nbd_refined 0.222 r_nbd_other 0.221 r_symmetry_hbond_refined 0.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.341 r_scangle_it 3.311 r_scbond_it 2.142 r_mcangle_it 2.114 r_angle_refined_deg 1.486 r_mcbond_it 1.302 r_angle_other_deg 0.824 r_nbd_refined 0.222 r_nbd_other 0.221 r_symmetry_hbond_refined 0.219 r_symmetry_vdw_other 0.213 r_xyhbond_nbd_refined 0.209 r_symmetry_vdw_refined 0.161 r_nbtor_other 0.085 r_chiral_restr 0.084 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2881 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MLPHARE phasing