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Crystal structure of liganded type 2 non specific lipid transfer protein from wheat
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.91 35.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.465 α = 90 b = 29.32 β = 127.65 c = 41.55 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.80 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.12 32.97 94.8 22535 22535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.123 1.153 79.71
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.12 32.9 21350 22496 1097 94.8 0.138 0.138 0.137 0.1592 0.162 0.1595 RANDOM 12.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.37 -0.58 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 46.855 r_dihedral_angle_4_deg 27.839 r_dihedral_angle_3_deg 12.83 r_scangle_it 6.124 r_dihedral_angle_1_deg 5.336 r_scbond_it 4.442 r_angle_other_deg 3.493 r_mcangle_it 3.19 r_mcbond_it 2.313 r_angle_refined_deg 1.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 46.855 r_dihedral_angle_4_deg 27.839 r_dihedral_angle_3_deg 12.83 r_scangle_it 6.124 r_dihedral_angle_1_deg 5.336 r_scbond_it 4.442 r_angle_other_deg 3.493 r_mcangle_it 3.19 r_mcbond_it 2.313 r_angle_refined_deg 1.937 r_mcbond_other 1.325 r_symmetry_vdw_refined 0.66 r_symmetry_hbond_refined 0.456 r_xyhbond_nbd_refined 0.401 r_symmetry_vdw_other 0.388 r_nbd_refined 0.303 r_nbd_other 0.247 r_nbtor_refined 0.187 r_chiral_restr 0.128 r_nbtor_other 0.093 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 483 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SnB phasing