1TTN

Solution structure of the ubiquitin-like domain of human DC-UBP from dendritic cells

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D_15N-separated_NOESY	1.2mM ubiquitin-like domain of DC-UBP ,10mM NaAc, 100mM NaCl, 5mM DTT, 0.02% sodium azide	92% H2O, 8% D2O		5.6		298
2	3D_13C-separated_NOESY	1.2mM ubiquitin-like domain of DC-UBP ,10mM NaAc, 100mM NaCl, 5mM DTT, 0.02% sodium azide	D2O		5.6		298
3	HNHA	1.2mM ubiquitin-like domain of DC-UBP ,10mM NaAc, 100mM NaCl, 5mM DTT, 0.02% sodium azide	92% H2O, 8% D2O		5.6		298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600

NMR Refinement
Method	Details	Software
torsion angle dynamics	the structures are based on 901 NOE-derived distance constraints,83 dihedral angle restraints,60 distance restraints from hydrogen bonds.	XwinNMR

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	150
Conformers Submitted Total Number	15
Representative Model	15 (minimized average structure)

Additional NMR Experimental Information
Details	The structure was determined using triple-resonance NMR spectroscopy

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	XwinNMR		Varian
2	processing	NMRPipe		Frank Delaglio
3	data analysis	NMRView	5.0	Bruce Johnson
4	refinement	CNS	1.1	A.T.Brunger et al.
5	refinement	ARIA	1.2	Jens Linge et al.

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.