1TRJ
Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
ELECTRON MICROSCOPY
Sample |
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80S ribosome |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | |
Cryogen Name | ETHANE |
Sample Vitrification Details | RAPID-FREEZING IN LIQUID ETHANE |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | |
Reported Resolution (Å) | 11.7 |
Resolution Method | |
Other Details | SPIDER PACKAGE |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 | ||||
Refinement Space | REAL | ||||
Refinement Protocol | OTHER | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details | METHOD--USING A RAPID MOTIF SEARCH MODULE OF SPIDER (THE CRYO-EM MAP USED FOR FITTING WAS INTERPOLATED TO PIXEL SIZE 2.82) |
Data Acquisition | |||||||||
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Detector Type | KODAK SO-163 FILM | ||||||||
Electron Dose (electrons/Å**2) | 15 |
Imaging Experiment | 1 |
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Date of Experiment | 2001-02-01 |
Temperature (Kelvin) | 93 |
Microscope Model | FEI TECNAI 20 |
Minimum Defocus (nm) | 4900 |
Maximum Defocus (nm) | 1400 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | 50000 |
Calibrated Magnification | 52000 |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 200 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
RECONSTRUCTION | SPIDER |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
CTF CORRECTION OF 3D MAPS BY WIENER FILTERATION |