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Solution structure of human oncogenic protein gankyrin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 TROSY-type HNCA, HN(CO)CA, HNCACB, CBCA(CO)NH, HNCO ~0.4 mM gankyrin U-15N,13C,70% 2H 5mM HEPES, 1 uM EDTA, 1mM DTT < 10 mM salt 7.4 ambient 300 2 3D_13C-separated_NOESY ~0.4 mM gankyrin U-15N, 13C 5mM HEPES, 1 uM EDTA, 1mM DTT < 10 mM salt 7.4 ambient 300 3 3D_15N-separated_NOESY ~0.4 mM gankyrin U-15N 5mM HEPES, 1 uM EDTA, 1mM DTT < 10 mM salt 7.4 ambient 300 4 residual dipolar coupling ~0.4 mM gankyrin U-15N 5mM HEPES, 1 uM EDTA, 1mM DTT < 10 mM salt 7.4 ambient 300
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 800 2 Bruker DMX 600
NMR Refinement Method Details Software simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations,structures with the lowest energy Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Additional NMR Experimental Information Details Backbone amide residual dipolar coupling experiment was performed in the presence of filamentous Pf1 phage
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.1 Bruker 2 processing XwinNMR 3.1 Bruker 3 processing NMRPipe 1.0 Delaglio 4 data analysis NMRView 4.0 Johnson 5 structure solution CNS 1.0 Brunger 6 refinement CNS 1.0 Brunger