1TQR
NMR Structure of DNA 17-mer GGAAAATCTCTAGCAGT corresponding to the extremity of the U5 LTR of the HIV-1 genome
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D_NOESY | phosphte buffer PH6.7 | ||||||
2 | 2D_TOCSY | phosphte buffer PH6.7 | ||||||
3 | DQF-COSY | phosphte buffer PH6.7 | ||||||
4 | 2D_HSQC_1H-13C | phosphte buffer PH6.7 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics including classical and RDC constraints | in the first stage the classical constraints were used with TAD at high temperature, in a second stage the RDC were gradually added with TAD at low temperature (200K) | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 9 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 0.9a |