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Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to ATP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TQI pdb entry 1TQI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.83 293 PEG 900, SODIUM PHOSPHATE, SODIUM CITRATE, pH 3.83, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.59 52.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.141 α = 90 b = 44.512 β = 93.95 c = 62.687 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors 2004-01-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 24.7 98.6 0.052 26.78 4.1 18666 18666
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.155 97.8 0.174 9.17 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1TQI 2.1 50 18666 17689 977 98.61 0.16756 0.16496 0.179 0.2152 0.2249 RANDOM 31.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 1.21 -1.42 1.78
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.833 r_dihedral_angle_1_deg 7.505 r_scbond_it 5.868 r_mcangle_it 3.6 r_angle_refined_deg 2.451 r_mcbond_it 2.086 r_angle_other_deg 1.057 r_symmetry_vdw_other 0.318 r_symmetry_hbond_refined 0.299 r_nbd_other 0.263
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.833 r_dihedral_angle_1_deg 7.505 r_scbond_it 5.868 r_mcangle_it 3.6 r_angle_refined_deg 2.451 r_mcbond_it 2.086 r_angle_other_deg 1.057 r_symmetry_vdw_other 0.318 r_symmetry_hbond_refined 0.299 r_nbd_other 0.263 r_nbd_refined 0.253 r_xyhbond_nbd_refined 0.229 r_symmetry_vdw_refined 0.208 r_chiral_restr 0.158 r_nbtor_other 0.099 r_bond_refined_d 0.032 r_gen_planes_refined 0.02 r_gen_planes_other 0.02 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2189 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHARP phasing