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Structure of the cytosolic Cu,Zn SOD from S. mansoni
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 277 30% PEG 4000, 0.2 M ammonium acetate, 0.1 M sodium acetate pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 4.60
Crystal Properties Matthews coefficient Solvent content 2.26 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.27 α = 90 b = 95.08 β = 103.55 c = 78.41 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2000-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 18 99.8 0.051 24.8 4 80845 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 98.9 0.126 9.2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 18 80801 80801 4056 99.7 0.158 0.157 0.1595 0.171 0.1728 RANDOM 12.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 -0.54 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.431 r_dihedral_angle_4_deg 9.806 r_dihedral_angle_3_deg 7.984 r_scangle_it 4.067 r_dihedral_angle_1_deg 2.854 r_scbond_it 2.565 r_mcangle_it 1.713 r_angle_refined_deg 1.488 r_mcbond_it 1.005 r_nbd_refined 0.215
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.431 r_dihedral_angle_4_deg 9.806 r_dihedral_angle_3_deg 7.984 r_scangle_it 4.067 r_dihedral_angle_1_deg 2.854 r_scbond_it 2.565 r_mcangle_it 1.713 r_angle_refined_deg 1.488 r_mcbond_it 1.005 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.205 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.112 r_symmetry_hbond_refined 0.104 r_metal_ion_refined 0.062 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4476 Nucleic Acid Atoms Solvent Atoms 775 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing