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Crystal Structure of mini-IGF-1(2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.65 289 Citrate, ethanol, pH 6.65, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.6 53.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.86 α = 90 b = 61.98 β = 90 c = 70.82 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors 2003-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6B 1.0000 Photon Factory BL-6B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 50 99.6 0.096 16.7 23469 23375 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.45 100 0.376 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD or SIRAS THROUGHOUT 1.42 8 23469 23375 1262 99.95 0.213 0.198 0.196 0.224 0.256 RANDOM 16.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.68 0.37 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.462 r_scangle_it 3.657 r_scbond_it 2.436 r_angle_refined_deg 1.621 r_mcangle_it 1.572 r_mcbond_it 0.895 r_angle_other_deg 0.855 r_symmetry_vdw_other 0.369 r_nbd_other 0.242 r_nbd_refined 0.231
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.462 r_scangle_it 3.657 r_scbond_it 2.436 r_angle_refined_deg 1.621 r_mcangle_it 1.572 r_mcbond_it 0.895 r_angle_other_deg 0.855 r_symmetry_vdw_other 0.369 r_nbd_other 0.242 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.146 r_symmetry_vdw_refined 0.112 r_chiral_restr 0.084 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 810 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHARP phasing