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Crystal structure of the GA module complexed with human serum albumin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AO6 PDB entries 1AO6 and 1PRB experimental model PDB 1PRB PDB entries 1AO6 and 1PRB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 291 Ammonium sulfate, citrate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.7 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.295 α = 90 b = 134.799 β = 90 c = 122.463 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Toroidal mirror 2003-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.000 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 100 0.07 13.1 10 24858 24858 5 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 100 0.374 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entries 1AO6 and 1PRB 2.7 65 22263 21137 1103 100 0.25113 0.24886 0.2347 0.29497 0.2851 RANDOM 31.306
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.24 -1.22 -2.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.193 r_dihedral_angle_3_deg 20.284 r_dihedral_angle_4_deg 18.855 r_dihedral_angle_1_deg 7.802 r_scangle_it 2.47 r_angle_refined_deg 1.665 r_scbond_it 1.585 r_mcangle_it 1.045 r_angle_other_deg 0.913 r_mcbond_it 0.673
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.193 r_dihedral_angle_3_deg 20.284 r_dihedral_angle_4_deg 18.855 r_dihedral_angle_1_deg 7.802 r_scangle_it 2.47 r_angle_refined_deg 1.665 r_scbond_it 1.585 r_mcangle_it 1.045 r_angle_other_deg 0.913 r_mcbond_it 0.673 r_nbd_refined 0.257 r_symmetry_vdw_other 0.209 r_nbd_other 0.192 r_xyhbond_nbd_refined 0.173 r_symmetry_vdw_refined 0.131 r_mcbond_other 0.119 r_nbtor_other 0.096 r_chiral_restr 0.095 r_symmetry_hbond_refined 0.02 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other 0.001 r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4853 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement ProDC data collection SCALEPACK data scaling MOLREP phasing