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HUMAN THROMBIN WITH ACTIVE SITE N-METHYL-D PHENYLALANYL-N-[5-(AMINOIMINOMETHYL)AMINO]-1-{{BENZOTHIAZOLYL)CARBONYL] BUTYL]-L-PROLINAMIDE TRIFLUROACETATE AND EXOSITE-HIRUGEN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FPC PDB ENTRY 1FPC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion - hanging drop - macroseeding 7.3 0.1M PHOSPHATE BUFFER AT PH 7.3, 27-28% PEG 8000. HANGING DROPS AND MACROSEEDING ., vapor diffusion - hanging drop - macroseeding
Crystal Properties Matthews coefficient Solvent content 2.4 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.79 α = 90 b = 72.53 β = 101 c = 73.12 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 AREA DETECTOR SIEMENS COLLIMATOR 1993-04-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 75 0.054 2.5 15300 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 50
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1FPC 2.3 7 2 13574 75 0.158 28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 20 p_planar_tor 4 p_scangle_it 3.8 p_scbond_it 2.6 p_mcangle_it 1.9 p_mcbond_it 1.1 p_multtor_nbd 0.31 p_xyhbond_nbd 0.28 p_singtor_nbd 0.22
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30 p_staggered_tor 20 p_planar_tor 4 p_scangle_it 3.8 p_scbond_it 2.6 p_mcangle_it 1.9 p_mcbond_it 1.1 p_multtor_nbd 0.31 p_xyhbond_nbd 0.28 p_singtor_nbd 0.22 p_chiral_restr 0.21 p_planar_d 0.054 p_angle_d 0.044 p_plane_restr 0.03 p_bond_d 0.015 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2322 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 40
Software Software Software Name Purpose XENGEN data collection XENGEN data reduction X-PLOR model building X-PLOR refinement XENGEN data scaling X-PLOR phasing