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The crystal structure of YloQ, a circularly permuted GTPase.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 PEG 5000, calcium acetate, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.3 46.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.97 α = 90 b = 47.97 β = 90 c = 279.89 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC QUANTUM 4 Si mirror 2003-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 0.870 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 22 99.4 0.127 6.3 4.7 44626 44626
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 99.7 0.5 2.7 4.3 4339
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.6 20.5 42211 42211 2243 100 0.14565 0.14565 0.14396 0.2079 0.17801 0.2343 RANDOM 22.801
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.762 r_dihedral_angle_4_deg 16.364 r_dihedral_angle_3_deg 14.64 r_dihedral_angle_1_deg 6.111 r_scangle_it 4.568 r_sphericity_free 4.347 r_scbond_it 3.398 r_mcangle_it 3.18 r_mcbond_it 2.345 r_rigid_bond_restr 2.063
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.762 r_dihedral_angle_4_deg 16.364 r_dihedral_angle_3_deg 14.64 r_dihedral_angle_1_deg 6.111 r_scangle_it 4.568 r_sphericity_free 4.347 r_scbond_it 3.398 r_mcangle_it 3.18 r_mcbond_it 2.345 r_rigid_bond_restr 2.063 r_sphericity_bonded 1.952 r_angle_refined_deg 1.253 r_angle_other_deg 0.967 r_mcbond_other 0.966 r_metal_ion_refined 0.338 r_symmetry_hbond_refined 0.268 r_symmetry_vdw_other 0.256 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.223 r_symmetry_vdw_refined 0.221 r_nbd_other 0.187 r_nbtor_other 0.081 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2322 Nucleic Acid Atoms Solvent Atoms 303 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling DM phasing