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Atomic Structure of A Novel Tryptophan-Zipper Pentamer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 PEG 400, Tris-HCl, ammonium sulfate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2 39.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.547 α = 97.37 b = 30.665 β = 91.94 c = 72.405 γ = 113.46
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 4 2003-03-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.9793 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 70.7 93.7 0.058 13.7 2.5 38990 38990
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.48 89.6 0.297 2.6 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 70.71 38990 37022 1970 92.84 0.21949 0.2164 0.2241 0.27709 0.2835 RANDOM 29.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.88 1.78 -0.25 1.01 -1.21 -1.8
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.927 r_dihedral_angle_1_deg 4.729 r_scbond_it 3.546 r_mcangle_it 2.579 r_angle_refined_deg 1.741 r_mcbond_it 1.402 r_symmetry_hbond_refined 0.212 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.21 r_xyhbond_nbd_refined 0.196
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.927 r_dihedral_angle_1_deg 4.729 r_scbond_it 3.546 r_mcangle_it 2.579 r_angle_refined_deg 1.741 r_mcbond_it 1.402 r_symmetry_hbond_refined 0.212 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.21 r_xyhbond_nbd_refined 0.196 r_chiral_restr 0.126 r_bond_refined_d 0.021 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2342 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing