1T5T
Structure of the (SR)Ca2+-ATPase Ca2-E1-ADP:AlF4- form
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.8 | 292 | PEG 6000, tert-butanol, sodium acetate, potassium chloride, magnesium chloride, glycerol, MOPS, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 292K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
3.9 | 68 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 162.477 | α = 90 |
b = 75.617 | β = 108.82 |
c = 151.651 | γ = 90 |
Symmetry | |
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Space Group | C 1 2 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | MARRESEARCH | 2004-02-24 | M | SINGLE WAVELENGTH | ||||||
2 | 1 | 100 | CCD | MARRESEARCH | 2004-02-24 | |||||||||
3 | 1 | 100 | IMAGE PLATE | MARRESEARCH | 2004-03-27 |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | BESSY BEAMLINE 14.1 | 0.952 | BESSY | 14.1 |
2 | SYNCHROTRON | BESSY BEAMLINE 14.1 | 0.952 | BESSY | 14.1 |
3 | SYNCHROTRON | EMBL/DESY, HAMBURG BEAMLINE X11 | 0.8116 | EMBL/DESY, HAMBURG | X11 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
1 | 2.9 | 50 | 99.9 | 0.11 | 0.11 | 23.9 | 7.3 | 38895 | 38895 | -3 | 80 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||
1 | 2.9 | 2.97 | 99.8 | 0.8 | 0.8 | 2.1 | 5.7 | 2554 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | 2.9 | 50 | 38895 | 37727 | 1153 | 99.88 | 0.24746 | 0.24746 | 0.24602 | 0.29348 | RANDOM | 74.729 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
-1.34 | -3.83 | 6.38 | -7.51 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 35.537 |
r_dihedral_angle_3_deg | 19.904 |
r_dihedral_angle_4_deg | 19.061 |
r_dihedral_angle_1_deg | 7.662 |
r_scangle_it | 2.334 |
r_angle_refined_deg | 1.571 |
r_scbond_it | 1.353 |
r_mcangle_it | 1.139 |
r_angle_other_deg | 0.878 |
r_mcbond_it | 0.607 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 7671 |
Nucleic Acid Atoms | |
Solvent Atoms | 43 |
Heterogen Atoms | 37 |
Software
Software | |
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Software Name | Purpose |
REFMAC | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |