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Structure of the (SR)Ca2+-ATPase Ca2-E1-AMPPCP form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 292 PEG 6000, tert-butanol, sodium acetate, potassium chloride, magnesium chloride, glycerol, MOPS, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.9 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 162.439 α = 90 b = 76.259 β = 108.7 c = 151.164 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-04 M SINGLE WAVELENGTH 2 1 100 CCD ADSC QUANTUM 4 2004-02-04 3 1 100 CCD MARRESEARCH 2004-01-13
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9792 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 0.9792 ESRF ID29 3 SYNCHROTRON BESSY BEAMLINE 14.1 0.95040 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 99.8 0.092 0.092 24.1 7 53349 53349 -3 77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.66 100 0.75 0.75 2.8 6.6 3518
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS + SAD THROUGHOUT 2.6 40 53349 52546 1529 99.76 0.24288 0.24288 0.24157 0.2361 0.28529 0.2737 RANDOM 76.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.11 -3.5 7.58 -7.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.012 r_dihedral_angle_3_deg 18.613 r_dihedral_angle_4_deg 17.267 r_dihedral_angle_1_deg 7.247 r_scangle_it 2.75 r_scbond_it 1.636 r_angle_refined_deg 1.564 r_mcangle_it 1.289 r_angle_other_deg 0.887 r_mcbond_it 0.695
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.012 r_dihedral_angle_3_deg 18.613 r_dihedral_angle_4_deg 17.267 r_dihedral_angle_1_deg 7.247 r_scangle_it 2.75 r_scbond_it 1.636 r_angle_refined_deg 1.564 r_mcangle_it 1.289 r_angle_other_deg 0.887 r_mcbond_it 0.695 r_nbd_refined 0.247 r_symmetry_vdw_other 0.236 r_nbd_other 0.202 r_xyhbond_nbd_refined 0.176 r_symmetry_vdw_refined 0.168 r_metal_ion_refined 0.132 r_symmetry_hbond_refined 0.109 r_mcbond_other 0.104 r_nbtor_other 0.093 r_chiral_restr 0.089 r_xyhbond_nbd_other 0.029 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7671 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing